What is returned by
dpkg -l libpetsc-complex*-dev python3-dolfinx* | cat
What is shown by
cat /etc/os-release
What is the output of
PETSC_DIR=/usr/lib/petscdir/petsc-complex python3 -c "import dolfinx; print(dolfinx.__path__); print(dolfinx.has_petsc_complex)"
Sorry for the language of my machine, I can translate the headers if you need it:
dpkg -l libpetsc-complex*-dev python3-dolfinx* | cat
Deseado=desconocido(U)/Instalar/eliminaR/Purgar/retener(H)
| Estado=No/Inst/ficheros-Conf/desempaqUetado/medio-conF/medio-inst(H)/espera-disparo(W)/pendienTe-disparo
|/ Err?=(ninguno)/requiere-Reinst (Estado,Err: mayúsc.=malo)
||/ Nombre Versión Arquitectura Descripción
+++-==============================-=================-============-=============================================================
un libpetsc-complex-3.6.2-dev <ninguna> <ninguna> (no hay ninguna descripción disponible)
un libpetsc-complex-3.6.3-dev <ninguna> <ninguna> (no hay ninguna descripción disponible)
ii libpetsc-complex-dev 3.16.5+dfsg1-1 all Virtual package depending on latest PETSc development package
ii libpetsc-complex3.14-dev:amd64 3.14.5+dfsg1-4 amd64 Static libraries, shared links, header files for PETSc
rc libpetsc-complex3.15-dev:amd64 3.15.5+dfsg1-1+b2 amd64 Static libraries, shared links, header files for PETSc
ii libpetsc-complex3.16-dev:amd64 3.16.5+dfsg1-1 amd64 Static libraries, shared links, header files for PETSc
ii python3-dolfinx:amd64 1:0.3.0-14 amd64 Python interface for DOLFIN (Python 3)
ii python3-dolfinx-complex 1:0.3.0-14 amd64 Python interface for DOLFIN (Python 3)
ii python3-dolfinx-real 1:0.3.0-14 amd64 Python interface for DOLFIN (Python 3)
cat /etc/os-release
PRETTY_NAME="Debian GNU/Linux bookworm/sid"
NAME="Debian GNU/Linux"
ID=debian
HOME_URL="https://www.debian.org/"
SUPPORT_URL="https://www.debian.org/support"
BUG_REPORT_URL="https://bugs.debian.org/"
PETSC_DIR=/usr/lib/petscdir/petsc-complex python3 -c "import dolfinx; print(dolfinx.__path__); print(dolfinx.has_petsc_complex)"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/lib/petscdir/petsc-complex/lib/python3/dist-packages/dolfinx/__init__.py", line 45, in <module>
from .fem.form import Form
File "/usr/lib/petscdir/petsc-complex/lib/python3/dist-packages/dolfinx/fem/__init__.py", line 10, in <module>
from dolfinx.fem.assemble import (apply_lifting, apply_lifting_nest,
File "/usr/lib/petscdir/petsc-complex/lib/python3/dist-packages/dolfinx/fem/assemble.py", line 16, in <module>
from dolfinx.fem.dirichletbc import DirichletBC
File "/usr/lib/petscdir/petsc-complex/lib/python3/dist-packages/dolfinx/fem/dirichletbc.py", line 19, in <module>
from dolfinx.fem.function import Function, FunctionSpace
File "/usr/lib/petscdir/petsc-complex/lib/python3/dist-packages/dolfinx/fem/function.py", line 16, in <module>
from dolfinx import common, cpp, jit
File "/usr/lib/petscdir/petsc-complex/lib/python3/dist-packages/dolfinx/jit.py", line 28, in <module>
raise RuntimeError("Could not find DOLFINx pkg-config file. Make sure appropriate paths are set.")
RuntimeError: Could not find DOLFINx pkg-config file. Make sure appropriate paths are set.
Those pieces look correct. Can you now report
dpkg -l pkg-config *dolfinx* | cat
and
ls -l /usr/lib/petscdir/petsc-complex /etc/alternatives/petsc-complex
sure! (thank you very much btw)
dpkg -l pkg-config *dolfinx* | cat
dpkg-query: no se ha encontrado ningún paquete que corresponda con dolfinx.
Deseado=desconocido(U)/Instalar/eliminaR/Purgar/retener(H)
| Estado=No/Inst/ficheros-Conf/desempaqUetado/medio-conF/medio-inst(H)/espera-disparo(W)/pendienTe-disparo
|/ Err?=(ninguno)/requiere-Reinst (Estado,Err: mayúsc.=malo)
||/ Nombre Versión Arquitectura Descripción
+++-==============-============-============-===========================================
ii pkg-config 0.29.2-1 amd64 manage compile and link flags for libraries
and
ls -l /usr/lib/petscdir/petsc-complex /etc/alternatives/petsc-complex
lrwxrwxrwx 1 root root 52 mar 21 19:57 /etc/alternatives/petsc-complex -> /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex
lrwxrwxrwx 1 root root 31 oct 8 04:33 /usr/lib/petscdir/petsc-complex -> /etc/alternatives/petsc-complex
Eh, I wasn’t specific enough. Give me
dpkg -l pkg-config "*dolfinx*" | cat
Deseado=desconocido(U)/Instalar/eliminaR/Purgar/retener(H)
| Estado=No/Inst/ficheros-Conf/desempaqUetado/medio-conF/medio-inst(H)/espera-disparo(W)/pendienTe-disparo
|/ Err?=(ninguno)/requiere-Reinst (Estado,Err: mayúsc.=malo)
||/ Nombre Versión Arquitectura Descripción
++±==============================-==============================-============-=======================================================
ii dolfinx-doc 1:0.3.0-14 all Documentation and demo programs for DOLFIN
un libdolfinx-complex-dev (no hay ninguna descripción disponible)
ii libdolfinx-complex0.3:amd64 1:0.3.0-14 amd64 Shared libraries for DOLFIN
ii libdolfinx-complex2019.2:amd64 2019.2.0~git20210130.c14cb0a-5 amd64 Shared libraries for DOLFIN
ii libdolfinx-dev:amd64 1:0.3.0-14 amd64 Shared links and header files for DOLFIN
ii libdolfinx-real-dev:amd64 1:0.3.0-14 amd64 Shared links and header files for DOLFIN (real numbers)
ii libdolfinx-real0.3:amd64 1:0.3.0-14 amd64 Shared libraries for DOLFIN
ii pkg-config 0.29.2-1 amd64 manage compile and link flags for libraries
ii python3-dolfinx:amd64 1:0.3.0-14 amd64 Python interface for DOLFIN (Python 3)
ii python3-dolfinx-complex 1:0.3.0-14 amd64 Python interface for DOLFIN (Python 3)
ii python3-dolfinx-real 1:0.3.0-14 amd64 Python interface for DOLFIN (Python 3)
ok, this is the problem. You’ll need to install it.
I’ll have to inspect why it’s not getting installed automatically with python3-dolfinx-complex
Thank you very much, it works now. Finally, after many months of reading that the complex solver is much more efficient that the real one for cases like the Helmholtz equation, now I can test it by myself!!