I’m trying to use the Mesh() function from dolfin but get the following error: “cannot import name ‘Mesh’ from ‘dolfin’ (unknown location)”
I have the latest version of fenics installed using Ubuntu (see image), so I’m not sure why this is happening.
dokken
January 17, 2023, 6:25pm
2
Could you post the output of
which python3
, python3 -c "from dolfin import *"
and python3 -m pip list
?
jfrutschy@LAPTOP-BPVHA55G:~ which python3, python3 -c "from dolfin import *"
/usr/bin/python3
jfrutschy@LAPTOP-BPVHA55G:~ python3 -m pip list
Package Version
blinker 1.4
command-not-found 0.3
cryptography 3.4.8
dbus-python 1.2.18
distro 1.7.0
distro-info 1.1build1
fenics-dijitso 2019.2.0.dev0
fenics-dolfin 2019.2.0.dev0
fenics-ffc 2019.2.0.dev0
fenics-fiat 2019.2.0.dev0
fenics-ufl 2022.2.0
httplib2 0.20.2
importlib-metadata 4.6.4
jeepney 0.7.1
keyring 23.5.0
launchpadlib 1.10.16
lazr.restfulclient 0.14.4
lazr.uri 1.0.6
more-itertools 8.10.0
mpi4py 3.1.3
mpmath 0.0.0
mshr 2019.2.0.dev0
netifaces 0.11.0
numpy 1.21.5
oauthlib 3.2.0
petsc4py 3.15.1
pip 22.0.2
pkgconfig 1.5.5
ply 3.11
pybind11 2.9.1
PyGObject 3.42.1
PyJWT 2.3.0
pyparsing 2.4.7
python-apt 2.3.0+ubuntu2.1
PyYAML 5.4.1
SecretStorage 3.3.1
setuptools 59.6.0
six 1.16.0
slepc4py 3.15.1
sympy 1.9
systemd-python 234
ubuntu-advantage-tools 27.12
ufw 0.36.1
unattended-upgrades 0.1
wadllib 1.3.6
wheel 0.37.1
zipp 1.0.0
jfrutschy@LAPTOP-BPVHA55G:~$
dokken
January 17, 2023, 8:00pm
4
Could you please run each of the commands one by one, and post the output encapsulated in 3x`, i.e.
which python3
```
Put output here
```
python3 -c "from dolfin import *"
Etc…
My bad!
which python3
/usr/bin/python3
python3 -c “from dolfin import”
no output
python3 -m pip list
Package Version
blinker 1.4
command-not-found 0.3
cryptography 3.4.8
dbus-python 1.2.18
distro 1.7.0
distro-info 1.1build1
fenics-dijitso 2019.2.0.dev0
fenics-dolfin 2019.2.0.dev0
fenics-ffc 2019.2.0.dev0
fenics-fiat 2019.2.0.dev0
fenics-ufl 2022.2.0
httplib2 0.20.2
importlib-metadata 4.6.4
jeepney 0.7.1
keyring 23.5.0
launchpadlib 1.10.16
lazr.restfulclient 0.14.4
lazr.uri 1.0.6
more-itertools 8.10.0
mpi4py 3.1.3
mpmath 0.0.0
mshr 2019.2.0.dev0
netifaces 0.11.0
numpy 1.21.5
oauthlib 3.2.0
petsc4py 3.15.1
pip 22.0.2
pkgconfig 1.5.5
ply 3.11
pybind11 2.9.1
PyGObject 3.42.1
PyJWT 2.3.0
pyparsing 2.4.7
python-apt 2.3.0+ubuntu2.1
PyYAML 5.4.1
SecretStorage 3.3.1
setuptools 59.6.0
six 1.16.0
slepc4py 3.15.1
sympy 1.9
systemd-python 234
ubuntu-advantage-tools 27.12
ufw 0.36.1
unattended-upgrades 0.1
wadllib 1.3.6
wheel 0.37.1
zipp 1.0.0
dokken
January 18, 2023, 5:03am
6
Seems like dolfin is set up correctly. Could you try creating a minimal reproducible example?
Well now Spyder can’t even find dolfin:
There is an unresolved post on this exact issue:
Hi, I am trying to install fenics2019.2 in my Ubuntu 20.04 machine. I followed the following instructions:
sudo apt-get install software-properties-common
sudo add-apt-repository ppa:fenics-packages/fenics
sudo apt-get update
sudo apt-get install --no-install-recommends fenics
It got install successfully but when I try to import fenics, I am getting this error message:
ModuleNotFoundError: No module named ‘dolfin’
[image]
I cannot reproduce any example without being able to import dolfin. Any idea on what to do?
dokken
January 18, 2023, 5:53pm
8
This has to do with how spyder reads the $PYTHONPATH.
As you shower earlier, dolfin is installed on your system, But you haven’t configured spyder to find it properly. I do not use spyder myself, so I dont have much experience with it.
1 Like
Ok. I placed my code in the same location as my dolfin installation:
But now i get the error: “module ‘sys’ has no attribute 'getdlopenflags”
Have you seen this error before?