Problems with my codes that do not work any more

[francesco-ballarin]

On

TypeError: BoundingBoxTree.__init__() takes 2 positional arguments but 3 were given

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Start fixing code for nightly build

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TypeError: BoundingBoxTree.__init__() takes 2 positional arguments but 3 were given

Hi everbody! I’m trying to load a .msh mesh into dolfinxa and call BoundingBoxTree I get the error BoundingBoxTree.__init__() takes 2 positional arguments but 3 were given my code is: import dolfinx import gmsh from mpi4py import MPI from dolfinx.io import gmshio domain, cell_tags, ft = gmshio.read_from_msh("msh/venturi_beta08_40.msh", MPI.COMM_WORLD, 0, gdim=2) ft.name = "Facet markers" tdim = domain.topology.dim tree = dolfinx.geometry.BoundingBoxTree(domain, tdim) Have anyone a idea…

just a few days ago.

On

[harma-ThinkStation-P620:2172546] [ 5] /lib/x86_64-linux-gnu/libhdf5_openmpi.so.103(H5check_version+0x21)[0x7f670c43f6d1]
[harma-ThinkStation-P620:2172546] [ 6] /home/harma/.local/lib/python3.10/site-packages/h5py/h5f.cpython-310-x86_64-linux-gnu.so(+0x77d0)[0x7f65fb0da7d0]

it seems to me that you are using libhdf5_openmpi.so.103 from debian/ubuntu. You are better off using h5py from debian/ubuntu too, rather than pip installing a (possibly incompatible version) in $HOME/.local.