@floiseau Thank you very much for your reply. Unfortunately, I got the following error during running the test. Could you please help me figure this out? I am running FEniCS on Anaconda and have Meshio version 4.0.13 install on FEniCS environment.
test/conversion/test_conversion.py Fatal Python error: Aborted
Current thread 0x00007fa7dc39a740 (most recent call first):
File ββ, line 219 in _call_with_frames_removed
File ββ, line 1109 in exec_module
File ββ, line 671 in _load_unlocked
File ββ, line 975 in _find_and_load_unlocked
File ββ, line 991 in _find_and_load
File ββ, line 219 in _call_with_frames_removed
File ββ, line 1042 in _handle_fromlist
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/h5py/init.pyβ, line 55 in
File ββ, line 219 in _call_with_frames_removed
File ββ, line 783 in exec_module
File ββ, line 671 in _load_unlocked
File ββ, line 975 in _find_and_load_unlocked
File ββ, line 991 in _find_and_load
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/meshio/xdmf/main.pyβ, line 320 in init
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/meshio/xdmf/main.pyβ, line 528 in write
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/meshio/_helpers.pyβ, line 144 in write
File β/home/phuris/Meshing Tools/msh2xdmf-master/msh2xdmf.pyβ, line 76 in export_domain
File β/home/phuris/Meshing Tools/msh2xdmf-master/msh2xdmf.pyβ, line 26 in msh2xdmf
File β/home/phuris/Meshing Tools/msh2xdmf-master/test/conversion/test_conversion.pyβ, line 14 in test_conversion
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/python.pyβ, line 182 in pytest_pyfunc_call
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/callers.pyβ, line 187 in _multicall
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/manager.pyβ, line 84 in
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/manager.pyβ, line 93 in _hookexec
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/hooks.pyβ, line 286 in call
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/python.pyβ, line 1477 in runtest
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/runner.pyβ, line 135 in pytest_runtest_call
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/callers.pyβ, line 187 in _multicall
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/manager.pyβ, line 84 in
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/manager.pyβ, line 93 in _hookexec
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/hooks.pyβ, line 286 in call
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/runner.pyβ, line 217 in
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/runner.pyβ, line 244 in from_call
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/runner.pyβ, line 216 in call_runtest_hook
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/runner.pyβ, line 186 in call_and_report
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/runner.pyβ, line 100 in runtestprotocol
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/runner.pyβ, line 85 in pytest_runtest_protocol
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/callers.pyβ, line 187 in _multicall
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/manager.pyβ, line 84 in
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/manager.pyβ, line 93 in _hookexec
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/hooks.pyβ, line 286 in call
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/main.pyβ, line 272 in pytest_runtestloop
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/callers.pyβ, line 187 in _multicall
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/manager.pyβ, line 84 in
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/manager.pyβ, line 93 in _hookexec
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/hooks.pyβ, line 286 in call
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/main.pyβ, line 247 in _main
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/main.pyβ, line 191 in wrap_session
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/main.pyβ, line 240 in pytest_cmdline_main
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/callers.pyβ, line 187 in _multicall
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/manager.pyβ, line 84 in
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/manager.pyβ, line 93 in _hookexec
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pluggy/hooks.pyβ, line 286 in call
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/_pytest/config/init.pyβ, line 124 in main
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/site-packages/pytest/main.pyβ, line 7 in
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/runpy.pyβ, line 86 in _run_code
File β/home/phuris/anaconda3/envs/fenicsproject/lib/python3.8/runpy.pyβ, line 193 in _run_module_as_main
Aborted (core dumped)